J3_8ZEJ_009
3D structure
- PDB id
- 8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8ZEJ|1|A|A|975, 8ZEJ|1|A|G|976, 8ZEJ|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZEJ_009 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.1169
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZEJ|1|A|U|955
8ZEJ|1|A|U|956
8ZEJ|1|A|U|957
8ZEJ|1|A|A|958
8ZEJ|1|A|A|959
8ZEJ|1|A|U|960
8ZEJ|1|A|U|961
8ZEJ|1|A|C|962
*
8ZEJ|1|A|G|973
8ZEJ|1|A|A|974
8ZEJ|1|A|A|975
8ZEJ|1|A|G|976
8ZEJ|1|A|A|977
8ZEJ|1|A|A|978
8ZEJ|1|A|C|979
8ZEJ|1|A|C|980
8ZEJ|1|A|U|981
8ZEJ|1|A|U|982
8ZEJ|1|A|A|983
8ZEJ|1|A|C|984
*
8ZEJ|1|A|G|1221
8ZEJ|1|A|G|1222
8ZEJ|1|A|C|1223
8ZEJ|1|A|U|1224
8ZEJ|1|A|A|1225
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
- Chain Z
- Transfer RNA; tRNA
Coloring options: