J3_8ZEJ_022

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8ZEJ|1|b|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZEJ_022 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.0874

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ZEJ|1|b|G|297
8ZEJ|1|b|G|298
8ZEJ|1|b|A|299
8ZEJ|1|b|A|300
8ZEJ|1|b|G|301
*
8ZEJ|1|b|C|316
8ZEJ|1|b|G|317
8ZEJ|1|b|C|318
8ZEJ|1|b|G|319
8ZEJ|1|b|A|320
8ZEJ|1|b|U|321
8ZEJ|1|b|A|322
8ZEJ|1|b|C|323
8ZEJ|1|b|A|324
8ZEJ|1|b|G|325
*
8ZEJ|1|b|C|337
8ZEJ|1|b|G|338
8ZEJ|1|b|U|339
8ZEJ|1|b|A|340
8ZEJ|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain v

50S ribosomal protein L24