J3_8ZEJ_023
3D structure
- PDB id
- 8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 8ZEJ|1|b|U|686, 8ZEJ|1|b|A|792, 8ZEJ|1|b|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZEJ_023 not in the Motif Atlas
- Geometric match to J3_5J7L_038
- Geometric discrepancy: 0.0985
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZEJ|1|b|U|683
8ZEJ|1|b|G|684
8ZEJ|1|b|A|685
8ZEJ|1|b|U|686
8ZEJ|1|b|C|687
8ZEJ|1|b|U|688
8ZEJ|1|b|A|689
*
8ZEJ|1|b|U|773
8ZEJ|1|b|G|774
8ZEJ|1|b|G|775
*
8ZEJ|1|b|C|791
8ZEJ|1|b|A|792
8ZEJ|1|b|A|793
8ZEJ|1|b|A|794
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
Coloring options: