J3_8ZFF_016
3D structure
- PDB id
- 8ZFF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8ZFF|1|A|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZFF_016 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1814
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8ZFF|1|A|U|1116
8ZFF|1|A|A|1117
8ZFF|1|A|U|1118
*
8ZFF|1|A|A|1155
8ZFF|1|A|G|1156
8ZFF|1|A|A|1157
8ZFF|1|A|C|1158
8ZFF|1|A|U|1159
8ZFF|1|A|G|1160
8ZFF|1|A|C|1161
*
8ZFF|1|A|G|1175
8ZFF|1|A|A|1176
8ZFF|1|A|G|1177
8ZFF|1|A|G|1178
8ZFF|1|A|A|1179
8ZFF|1|A|A|1180
8ZFF|1|A|G|1181
8ZFF|1|A|G|1182
8ZFF|1|A|U|1183
8ZFF|1|A|G|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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