J3_8ZFF_028

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFF_028 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1075

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8ZFF|1|a|G|1424
8ZFF|1|a|G|1425
8ZFF|1|a|G|1426
8ZFF|1|a|A|1427
8ZFF|1|a|C|1428
8ZFF|1|a|G|1429
*
8ZFF|1|a|C|1564
8ZFF|1|a|C|1565
*
8ZFF|1|a|G|1568
8ZFF|1|a|A|1569
8ZFF|1|a|A|1570
8ZFF|1|a|A|1571
8ZFF|1|a|A|1572
8ZFF|1|a|G|1573
8ZFF|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2