J3_8ZFG_007

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFG_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.1027

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8ZFG|1|A|C|936
8ZFG|1|A|A|937
8ZFG|1|A|A|938
8ZFG|1|A|G|939
*
8ZFG|1|A|C|1344
8ZFG|1|A|U|1345
8ZFG|1|A|A|1346
8ZFG|1|A|G|1347
8ZFG|1|A|U|1348
8ZFG|1|A|A|1349
8ZFG|1|A|A|1350
*
8ZFG|1|A|U|1372
8ZFG|1|A|G|1373
8ZFG|1|A|A|1374
8ZFG|1|A|A|1375
8ZFG|1|A|U|1376
8ZFG|1|A|A|1377
8ZFG|1|A|C|1378
8ZFG|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9