J3_8ZFG_011

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8ZFG|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFG_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1758

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

8ZFG|1|A|C|990
8ZFG|1|A|U|991
8ZFG|1|A|U|992
8ZFG|1|A|G|993
8ZFG|1|A|A|994
8ZFG|1|A|C|995
8ZFG|1|A|A|996
8ZFG|1|A|U|997
*
8ZFG|1|A|A|1044
8ZFG|1|A|C|1045
8ZFG|1|A|A|1046
8ZFG|1|A|G|1047
*
8ZFG|1|A|C|1210
8ZFG|1|A|U|1211
8ZFG|1|A|U|1212
8ZFG|1|A|A|1213
8ZFG|1|A|C|1214
8ZFG|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14