J3_8ZFG_014

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

8ZFG|1|A|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFG_014 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1843

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8ZFG|1|A|U|1073
8ZFG|1|A|G|1074
*
8ZFG|1|A|U|1083
8ZFG|1|A|G|1084
8ZFG|1|A|U|1085
8ZFG|1|A|U|1086
*
8ZFG|1|A|G|1099
8ZFG|1|A|C|1100
8ZFG|1|A|A|1101
8ZFG|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5

Chain U

Small ribosomal subunit protein bS21