J3_8ZFG_018

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFG_018 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0524

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8ZFG|1|a|G|30
8ZFG|1|a|C|31
*
8ZFG|1|a|G|474
8ZFG|1|a|C|475
8ZFG|1|a|G|476
8ZFG|1|a|A|477
8ZFG|1|a|A|478
8ZFG|1|a|A|479
8ZFG|1|a|A|480
8ZFG|1|a|G|481
*
8ZFG|1|a|C|509
8ZFG|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain t

Large ribosomal subunit protein uL24