J3_8ZFG_025

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8ZFG|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFG_025 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1937

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8ZFG|1|a|C|1298
8ZFG|1|a|G|1299
8ZFG|1|a|G|1300
8ZFG|1|a|A|1301
8ZFG|1|a|A|1302
8ZFG|1|a|G|1303
*
8ZFG|1|a|C|1625
8ZFG|1|a|A|1626
8ZFG|1|a|G|1627
*
8ZFG|1|a|C|1639
8ZFG|1|a|A|1640
8ZFG|1|a|A|1641
8ZFG|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains