J3_8ZFG_028

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFG_028 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1208

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8ZFG|1|a|G|1424
8ZFG|1|a|G|1425
8ZFG|1|a|G|1426
8ZFG|1|a|A|1427
8ZFG|1|a|C|1428
8ZFG|1|a|G|1429
*
8ZFG|1|a|C|1564
8ZFG|1|a|C|1565
*
8ZFG|1|a|G|1568
8ZFG|1|a|A|1569
8ZFG|1|a|A|1570
8ZFG|1|a|A|1571
8ZFG|1|a|A|1572
8ZFG|1|a|G|1573
8ZFG|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2