J3_8ZFI_024

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFI_024 not in the Motif Atlas

Geometric match to J3_4WF9_003

Geometric discrepancy: 0.0875

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8ZFI|1|b|C|698
8ZFI|1|b|A|699
8ZFI|1|b|G|700
*
8ZFI|1|b|C|732
8ZFI|1|b|G|733
8ZFI|1|b|A|734
8ZFI|1|b|A|735
8ZFI|1|b|C|736
*
8ZFI|1|b|G|760
8ZFI|1|b|A|761
8ZFI|1|b|U|762
8ZFI|1|b|G|763

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain c

50S ribosomal protein L2