J3_8ZFI_027

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8ZFI|1|b|C|1607, 8ZFI|1|b|A|1609, 8ZFI|1|b|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZFI_027 not in the Motif Atlas

Geometric match to J3_5J7L_042

Geometric discrepancy: 0.2029

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8ZFI|1|b|C|1306
8ZFI|1|b|A|1307
8ZFI|1|b|A|1308
8ZFI|1|b|G|1309
*
8ZFI|1|b|C|1605
8ZFI|1|b|C|1606
8ZFI|1|b|C|1607
8ZFI|1|b|A|1608
8ZFI|1|b|A|1609
8ZFI|1|b|A|1610
8ZFI|1|b|C|1611
*
8ZFI|1|b|G|1620
8ZFI|1|b|U|1621
8ZFI|1|b|G|1622

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 6

50S ribosomal protein L34