J3_8ZGR_001
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 8ZGR|1|LA|U|117, 8ZGR|1|LA|G|120, 8ZGR|1|LA|A|121, 8ZGR|1|LA|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZGR_001 not in the Motif Atlas
- Homologous match to J3_8CRE_001
- Geometric discrepancy: 0.0613
- The information below is about J3_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8ZGR|1|LA|C|113
8ZGR|1|LA|A|114
8ZGR|1|LA|A|115
8ZGR|1|LA|A|116
8ZGR|1|LA|U|117
8ZGR|1|LA|U|118
8ZGR|1|LA|U|119
8ZGR|1|LA|G|120
8ZGR|1|LA|A|121
8ZGR|1|LA|A|122
8ZGR|1|LA|A|123
*
8ZGR|1|LA|U|149
8ZGR|1|LA|A|150
8ZGR|1|LA|A|151
8ZGR|1|LA|U|152
8ZGR|1|LA|U|153
8ZGR|1|LA|U|154
8ZGR|1|LA|G|155
8ZGR|1|LA|G|156
8ZGR|1|LA|A|157
8ZGR|1|LA|G|158
*
8ZGR|1|LA|C|263
8ZGR|1|LA|G|264
8ZGR|1|LA|A|265
8ZGR|1|LA|A|266
8ZGR|1|LA|G|267
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Lk
- Large ribosomal subunit protein eL36A
Coloring options: