J3_8ZGR_023
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUUU
- Length
- 38 nucleotides
- Bulged bases
- 8ZGR|1|LA|A|3167, 8ZGR|1|LA|U|3168, 8ZGR|1|LA|A|3171, 8ZGR|1|LA|G|3172, 8ZGR|1|LA|A|3214, 8ZGR|1|LA|G|3215, 8ZGR|1|LA|C|3216, 8ZGR|1|LA|G|3218, 8ZGR|1|LA|A|3267, 8ZGR|1|LA|U|3269, 8ZGR|1|LA|C|3271, 8ZGR|1|LA|A|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGR|1|LA|A|3166
8ZGR|1|LA|A|3167
8ZGR|1|LA|U|3168
8ZGR|1|LA|A|3169
8ZGR|1|LA|U|3170
8ZGR|1|LA|A|3171
8ZGR|1|LA|G|3172
8ZGR|1|LA|A|3173
8ZGR|1|LA|U|3174
8ZGR|1|LA|G|3175
*
8ZGR|1|LA|C|3211
8ZGR|1|LA|A|3212
8ZGR|1|LA|U|3213
8ZGR|1|LA|A|3214
8ZGR|1|LA|G|3215
8ZGR|1|LA|C|3216
8ZGR|1|LA|A|3217
8ZGR|1|LA|G|3218
8ZGR|1|LA|G|3219
*
8ZGR|1|LA|C|3264
8ZGR|1|LA|G|3265
8ZGR|1|LA|A|3266
8ZGR|1|LA|A|3267
8ZGR|1|LA|U|3268
8ZGR|1|LA|U|3269
8ZGR|1|LA|G|3270
8ZGR|1|LA|C|3271
8ZGR|1|LA|A|3272
8ZGR|1|LA|A|3273
8ZGR|1|LA|U|3274
8ZGR|1|LA|G|3275
8ZGR|1|LA|U|3276
8ZGR|1|LA|C|3277
8ZGR|1|LA|A|3278
8ZGR|1|LA|U|3279
8ZGR|1|LA|U|3280
8ZGR|1|LA|U|3281
8ZGR|1|LA|U|3282
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LO
- Large ribosomal subunit protein eL14A
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain Lh
- Large ribosomal subunit protein eL33A
Coloring options: