J3_8ZGR_026

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAC*GAUACGU*AAUCUU

Length

16 nucleotides

Bulged bases

8ZGR|1|LC|U|60, 8ZGR|1|LC|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGR|1|LC|A|43
8ZGR|1|LC|A|44
8ZGR|1|LC|C|45
*
8ZGR|1|LC|G|58
8ZGR|1|LC|A|59
8ZGR|1|LC|U|60
8ZGR|1|LC|A|61
8ZGR|1|LC|C|62
8ZGR|1|LC|G|63
8ZGR|1|LC|U|64
*
8ZGR|1|LC|A|96
8ZGR|1|LC|A|97
8ZGR|1|LC|U|98
8ZGR|1|LC|C|99
8ZGR|1|LC|U|100
8ZGR|1|LC|U|101

Current chains

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LZ

Large ribosomal subunit protein uL23

Chain Lj

Large ribosomal subunit protein uL29A

Chain Ll

Large ribosomal subunit protein eL37A

Chain Ln

Large ribosomal subunit protein eL39