J3_8ZGR_031
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGA*UAAUAGGGA*UUUUCAUUA
- Length
- 21 nucleotides
- Bulged bases
- 8ZGR|1|S2|U|864, 8ZGR|1|S2|U|959
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGR|1|S2|U|633
8ZGR|1|S2|G|634
8ZGR|1|S2|A|635
*
8ZGR|1|S2|U|861
8ZGR|1|S2|A|862
8ZGR|1|S2|A|863
8ZGR|1|S2|U|864
8ZGR|1|S2|A|865
8ZGR|1|S2|G|866
8ZGR|1|S2|G|867
8ZGR|1|S2|G|868
8ZGR|1|S2|A|869
*
8ZGR|1|S2|U|958
8ZGR|1|S2|U|959
8ZGR|1|S2|U|960
8ZGR|1|S2|U|961
8ZGR|1|S2|C|962
8ZGR|1|S2|A|963
8ZGR|1|S2|U|964
8ZGR|1|S2|U|965
8ZGR|1|S2|A|966
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SU
- Small ribosomal subunit protein eS7A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sf
- Small ribosomal subunit protein eS27A
Coloring options: