3D structure

PDB id
8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with A/A tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUAG*CUUACG*CAAAG
Length
15 nucleotides
Bulged bases
8ZGR|1|S2|U|1079, 8ZGR|1|S2|U|1080, 8ZGR|1|S2|A|1093
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZGR|1|S2|C|1037
8ZGR|1|S2|U|1038
8ZGR|1|S2|A|1039
8ZGR|1|S2|G|1040
*
8ZGR|1|S2|C|1078
8ZGR|1|S2|U|1079
8ZGR|1|S2|U|1080
8ZGR|1|S2|A|1081
8ZGR|1|S2|C|1082
8ZGR|1|S2|G|1083
*
8ZGR|1|S2|C|1090
8ZGR|1|S2|A|1091
8ZGR|1|S2|A|1092
8ZGR|1|S2|A|1093
8ZGR|1|S2|G|1094

Current chains

Chain S2
chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SP
Small ribosomal subunit protein uS2A
Chain SR
Small ribosomal subunit protein uS5
Chain Sa
Small ribosomal subunit protein eS21A
Chain Sb
Small ribosomal subunit protein uS8A
Chain Se
Small ribosomal subunit protein eS26B
Chain Sf
Small ribosomal subunit protein eS27A

Coloring options:

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