J3_8ZGR_035

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

8ZGR|1|S2|G|1584, 8ZGR|1|S2|A|1614, 8ZGR|1|S2|C|1615

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGR|1|S2|C|1161
8ZGR|1|S2|C|1162
8ZGR|1|S2|A|1163
8ZGR|1|S2|G|1164
*
8ZGR|1|S2|C|1581
8ZGR|1|S2|U|1582
8ZGR|1|S2|A|1583
8ZGR|1|S2|G|1584
8ZGR|1|S2|U|1585
8ZGR|1|S2|A|1586
8ZGR|1|S2|A|1587
*
8ZGR|1|S2|U|1609
8ZGR|1|S2|G|1610
8ZGR|1|S2|A|1611
8ZGR|1|S2|U|1612
8ZGR|1|S2|U|1613
8ZGR|1|S2|A|1614
8ZGR|1|S2|C|1615
8ZGR|1|S2|G|1616

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SL

Small ribosomal subunit protein eS28A