3D structure

PDB id
8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with A/A tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CCAGAC*GGGUGG*CUUAGACG
Length
20 nucleotides
Bulged bases
8ZGR|1|S2|A|1217, 8ZGR|1|S2|A|1219, 8ZGR|1|S2|G|1265, 8ZGR|1|S2|A|1444, 8ZGR|1|S2|G|1445, 8ZGR|1|S2|C|1447
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZGR|1|S2|C|1215
8ZGR|1|S2|C|1216
8ZGR|1|S2|A|1217
8ZGR|1|S2|G|1218
8ZGR|1|S2|A|1219
8ZGR|1|S2|C|1220
*
8ZGR|1|S2|G|1263
8ZGR|1|S2|G|1264
8ZGR|1|S2|G|1265
8ZGR|1|S2|U|1266
8ZGR|1|S2|G|1267
8ZGR|1|S2|G|1268
*
8ZGR|1|S2|C|1441
8ZGR|1|S2|U|1442
8ZGR|1|S2|U|1443
8ZGR|1|S2|A|1444
8ZGR|1|S2|G|1445
8ZGR|1|S2|A|1446
8ZGR|1|S2|C|1447
8ZGR|1|S2|G|1448

Current chains

Chain S2
chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SC
Small ribosomal subunit protein eS10A
Chain SM
Small ribosomal subunit protein uS14A
Chain SN
Small ribosomal subunit protein eS31

Coloring options:

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