J3_8ZGR_038
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAGAC*GGGUGG*CUUAGACG
- Length
- 20 nucleotides
- Bulged bases
- 8ZGR|1|S2|A|1217, 8ZGR|1|S2|A|1219, 8ZGR|1|S2|G|1265, 8ZGR|1|S2|A|1444, 8ZGR|1|S2|G|1445, 8ZGR|1|S2|C|1447
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGR|1|S2|C|1215
8ZGR|1|S2|C|1216
8ZGR|1|S2|A|1217
8ZGR|1|S2|G|1218
8ZGR|1|S2|A|1219
8ZGR|1|S2|C|1220
*
8ZGR|1|S2|G|1263
8ZGR|1|S2|G|1264
8ZGR|1|S2|G|1265
8ZGR|1|S2|U|1266
8ZGR|1|S2|G|1267
8ZGR|1|S2|G|1268
*
8ZGR|1|S2|C|1441
8ZGR|1|S2|U|1442
8ZGR|1|S2|U|1443
8ZGR|1|S2|A|1444
8ZGR|1|S2|G|1445
8ZGR|1|S2|A|1446
8ZGR|1|S2|C|1447
8ZGR|1|S2|G|1448
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SC
- Small ribosomal subunit protein eS10A
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SN
- Small ribosomal subunit protein eS31
Coloring options: