J3_8ZGR_039
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- 8ZGR|1|S2|U|1286, 8ZGR|1|S2|U|1423
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGR|1|S2|U|1282
8ZGR|1|S2|U|1283
8ZGR|1|S2|C|1284
8ZGR|1|S2|U|1285
8ZGR|1|S2|U|1286
8ZGR|1|S2|A|1287
8ZGR|1|S2|G|1288
*
8ZGR|1|S2|C|1327
8ZGR|1|S2|G|1328
8ZGR|1|S2|A|1329
8ZGR|1|S2|G|1330
8ZGR|1|S2|A|1331
8ZGR|1|S2|C|1332
*
8ZGR|1|S2|G|1419
8ZGR|1|S2|C|1420
8ZGR|1|S2|A|1421
8ZGR|1|S2|A|1422
8ZGR|1|S2|U|1423
8ZGR|1|S2|A|1424
8ZGR|1|S2|A|1425
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SR
- Small ribosomal subunit protein uS5
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