J3_8ZGR_040

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

8ZGR|1|S2|U|1320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGR|1|S2|U|1293
8ZGR|1|S2|G|1294
*
8ZGR|1|S2|U|1303
8ZGR|1|S2|G|1304
8ZGR|1|S2|U|1305
8ZGR|1|S2|C|1306
*
8ZGR|1|S2|G|1318
8ZGR|1|S2|A|1319
8ZGR|1|S2|U|1320
8ZGR|1|S2|A|1321
8ZGR|1|S2|A|1322

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A

Chain SP

Small ribosomal subunit protein uS2A

Chain SR

Small ribosomal subunit protein uS5