J3_8ZGY_023

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

8ZGY|1|LA|A|3171, 8ZGY|1|LA|G|3172, 8ZGY|1|LA|A|3214, 8ZGY|1|LA|G|3215, 8ZGY|1|LA|G|3218, 8ZGY|1|LA|A|3267, 8ZGY|1|LA|U|3269, 8ZGY|1|LA|C|3271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|LA|U|3170
8ZGY|1|LA|A|3171
8ZGY|1|LA|G|3172
8ZGY|1|LA|A|3173
8ZGY|1|LA|U|3174
8ZGY|1|LA|G|3175
*
8ZGY|1|LA|C|3211
8ZGY|1|LA|A|3212
8ZGY|1|LA|U|3213
8ZGY|1|LA|A|3214
8ZGY|1|LA|G|3215
8ZGY|1|LA|C|3216
8ZGY|1|LA|A|3217
8ZGY|1|LA|G|3218
8ZGY|1|LA|G|3219
*
8ZGY|1|LA|C|3264
8ZGY|1|LA|G|3265
8ZGY|1|LA|A|3266
8ZGY|1|LA|A|3267
8ZGY|1|LA|U|3268
8ZGY|1|LA|U|3269
8ZGY|1|LA|G|3270
8ZGY|1|LA|C|3271
8ZGY|1|LA|A|3272
8ZGY|1|LA|A|3273
8ZGY|1|LA|U|3274
8ZGY|1|LA|G|3275
8ZGY|1|LA|U|3276
8ZGY|1|LA|C|3277
8ZGY|1|LA|A|3278

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LH

Large ribosomal subunit protein eL6B

Chain LO

Large ribosomal subunit protein eL14A

Chain LQ

Large ribosomal subunit protein uL13A

Chain LR

Large ribosomal subunit protein uL22A

Chain Lh

Large ribosomal subunit protein eL33A