3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AGAG*CAG*UCGAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8ZGY_031 not in the Motif Atlas
Geometric match to J3_8P9A_073
Geometric discrepancy: 0.3014
The information below is about J3_8P9A_073
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97642.1
Basepair signature
cWW-tSH-F-F-cWW-F-tWW-cWW
Number of instances in this motif group
2

Unit IDs

8ZGY|1|S2|A|760
8ZGY|1|S2|G|761
8ZGY|1|S2|A|762
8ZGY|1|S2|G|763
*
8ZGY|1|S2|C|773
8ZGY|1|S2|A|774
8ZGY|1|S2|G|775
*
8ZGY|1|S2|U|785
8ZGY|1|S2|C|786
8ZGY|1|S2|G|787
8ZGY|1|S2|A|788
8ZGY|1|S2|A|789
8ZGY|1|S2|U|790

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SS
Small ribosomal subunit protein eS4A
Chain SW
Small ribosomal subunit protein uS4A
Chain Sd
Small ribosomal subunit protein eS24A

Coloring options:


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