3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AAC*GGACUA*UGGAAGUUU
Length
18 nucleotides
Bulged bases
8ZGY|1|S2|U|1413, 8ZGY|1|S2|U|1414
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZGY|1|S2|A|1336
8ZGY|1|S2|A|1337
8ZGY|1|S2|C|1338
*
8ZGY|1|S2|G|1386
8ZGY|1|S2|G|1387
8ZGY|1|S2|A|1388
8ZGY|1|S2|C|1389
8ZGY|1|S2|U|1390
8ZGY|1|S2|A|1391
*
8ZGY|1|S2|U|1407
8ZGY|1|S2|G|1408
8ZGY|1|S2|G|1409
8ZGY|1|S2|A|1410
8ZGY|1|S2|A|1411
8ZGY|1|S2|G|1412
8ZGY|1|S2|U|1413
8ZGY|1|S2|U|1414
8ZGY|1|S2|U|1415

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SB
Small ribosomal subunit protein uS7
Chain SF
Small ribosomal subunit protein uS9A
Chain SG
Small ribosomal subunit protein eS17A
Chain SJ
Small ribosomal subunit protein uS10
Chain SM
Small ribosomal subunit protein uS14A
Chain SO
Small ribosomal subunit protein RACK1

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