J3_8ZH3_007

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGACAUGG*CUGG*CAUAAUG

Length

20 nucleotides

Bulged bases

8ZH3|1|LA|G|442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZH3|1|LA|C|435
8ZH3|1|LA|A|436
8ZH3|1|LA|G|437
8ZH3|1|LA|A|438
8ZH3|1|LA|C|439
8ZH3|1|LA|A|440
8ZH3|1|LA|U|441
8ZH3|1|LA|G|442
8ZH3|1|LA|G|443
*
8ZH3|1|LA|C|491
8ZH3|1|LA|U|492
8ZH3|1|LA|G|494
8ZH3|1|LA|G|495
*
8ZH3|1|LA|C|618
8ZH3|1|LA|A|619
8ZH3|1|LA|U|620
8ZH3|1|LA|A|621
8ZH3|1|LA|A|622
8ZH3|1|LA|U|623
8ZH3|1|LA|G|624

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LH

Large ribosomal subunit protein eL6B

Chain LR

Large ribosomal subunit protein uL22A

Chain Lg

Large ribosomal subunit protein eL32

Chain Lh

Large ribosomal subunit protein eL33A