J3_8ZH3_016
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 8ZH3|1|LA|C|1556, 8ZH3|1|LA|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZH3|1|LA|A|1537
8ZH3|1|LA|G|1538
8ZH3|1|LA|A|1539
8ZH3|1|LA|U|1540
8ZH3|1|LA|G|1541
8ZH3|1|LA|G|1542
*
8ZH3|1|LA|C|1551
8ZH3|1|LA|G|1552
8ZH3|1|LA|U|1553
8ZH3|1|LA|U|1554
8ZH3|1|LA|U|1555
8ZH3|1|LA|C|1556
8ZH3|1|LA|A|1557
8ZH3|1|LA|A|1558
8ZH3|1|LA|A|1559
8ZH3|1|LA|G|1560
*
8ZH3|1|LA|C|1579
8ZH3|1|LA|A|1580
8ZH3|1|LA|C|1581
8ZH3|1|LA|C|1582
8ZH3|1|LA|A|1583
8ZH3|1|LA|U|1584
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Ll
- Large ribosomal subunit protein eL37A
Coloring options: