J3_8ZH3_020
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGCUG*CACGUUCUAGCAUUCAAG*UGAU
- Length
- 27 nucleotides
- Bulged bases
- 8ZH3|1|LA|G|2549, 8ZH3|1|LA|U|2550, 8ZH3|1|LA|U|2551, 8ZH3|1|LA|C|2552, 8ZH3|1|LA|U|2553, 8ZH3|1|LA|A|2554, 8ZH3|1|LA|U|2558, 8ZH3|1|LA|U|2559, 8ZH3|1|LA|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZH3|1|LA|A|2529
8ZH3|1|LA|G|2530
8ZH3|1|LA|C|2531
8ZH3|1|LA|U|2532
8ZH3|1|LA|G|2533
*
8ZH3|1|LA|C|2546
8ZH3|1|LA|A|2547
8ZH3|1|LA|C|2548
8ZH3|1|LA|G|2549
8ZH3|1|LA|U|2550
8ZH3|1|LA|U|2551
8ZH3|1|LA|C|2552
8ZH3|1|LA|U|2553
8ZH3|1|LA|A|2554
8ZH3|1|LA|G|2555
8ZH3|1|LA|C|2556
8ZH3|1|LA|A|2557
8ZH3|1|LA|U|2558
8ZH3|1|LA|U|2559
8ZH3|1|LA|C|2560
8ZH3|1|LA|A|2561
8ZH3|1|LA|A|2562
8ZH3|1|LA|G|2563
*
8ZH3|1|LA|U|2578
8ZH3|1|LA|G|2579
8ZH3|1|LA|A|2580
8ZH3|1|LA|U|2581
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LJ
- Large ribosomal subunit protein eL8A
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Lb
- Large ribosomal subunit protein eL27A
- Chain Le
- Large ribosomal subunit protein eL30
- Chain Li
- Large ribosomal subunit protein eL34A
- Chain Lr
- Large ribosomal subunit protein eL43A
- Chain SQ
- Small ribosomal subunit protein eS1A
Coloring options: