J3_8ZH3_024

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

8ZH3|1|LA|A|3172, 8ZH3|1|LA|G|3173, 8ZH3|1|LA|A|3215, 8ZH3|1|LA|G|3216, 8ZH3|1|LA|G|3219, 8ZH3|1|LA|A|3268, 8ZH3|1|LA|U|3270, 8ZH3|1|LA|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZH3|1|LA|U|3171
8ZH3|1|LA|A|3172
8ZH3|1|LA|G|3173
8ZH3|1|LA|A|3174
8ZH3|1|LA|U|3175
8ZH3|1|LA|G|3176
*
8ZH3|1|LA|C|3212
8ZH3|1|LA|A|3213
8ZH3|1|LA|U|3214
8ZH3|1|LA|A|3215
8ZH3|1|LA|G|3216
8ZH3|1|LA|C|3217
8ZH3|1|LA|A|3218
8ZH3|1|LA|G|3219
8ZH3|1|LA|G|3220
*
8ZH3|1|LA|C|3265
8ZH3|1|LA|G|3266
8ZH3|1|LA|A|3267
8ZH3|1|LA|A|3268
8ZH3|1|LA|U|3269
8ZH3|1|LA|U|3270
8ZH3|1|LA|G|3271
8ZH3|1|LA|C|3272
8ZH3|1|LA|A|3273
8ZH3|1|LA|A|3274
8ZH3|1|LA|U|3275
8ZH3|1|LA|G|3276
8ZH3|1|LA|U|3277
8ZH3|1|LA|C|3278
8ZH3|1|LA|A|3279

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LH

Large ribosomal subunit protein eL6B

Chain LO

Large ribosomal subunit protein eL14A

Chain LQ

Large ribosomal subunit protein uL13A

Chain LR

Large ribosomal subunit protein uL22A

Chain Lh

Large ribosomal subunit protein eL33A