J3_8ZH3_030
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 8ZH3|1|S2|A|215, 8ZH3|1|S2|U|216, 8ZH3|1|S2|A|217, 8ZH3|1|S2|A|218, 8ZH3|1|S2|A|219, 8ZH3|1|S2|U|227, 8ZH3|1|S2|U|238, 8ZH3|1|S2|C|239, 8ZH3|1|S2|U|240, 8ZH3|1|S2|U|241, 8ZH3|1|S2|U|242
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZH3|1|S2|A|213
8ZH3|1|S2|G|214
8ZH3|1|S2|A|215
8ZH3|1|S2|U|216
8ZH3|1|S2|A|217
8ZH3|1|S2|A|218
8ZH3|1|S2|A|219
8ZH3|1|S2|A|220
8ZH3|1|S2|A|221
8ZH3|1|S2|A|222
8ZH3|1|S2|U|223
8ZH3|1|S2|C|224
8ZH3|1|S2|A|225
8ZH3|1|S2|A|226
8ZH3|1|S2|U|227
8ZH3|1|S2|G|228
*
8ZH3|1|S2|C|237
8ZH3|1|S2|U|238
8ZH3|1|S2|C|239
8ZH3|1|S2|U|240
8ZH3|1|S2|U|241
8ZH3|1|S2|U|242
8ZH3|1|S2|G|243
*
8ZH3|1|S2|C|250
8ZH3|1|S2|A|251
8ZH3|1|S2|U|252
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
Coloring options: