J3_8ZH3_033
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZH3_033 not in the Motif Atlas
- Geometric match to J3_8P9A_073
- Geometric discrepancy: 0.1435
- The information below is about J3_8P9A_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.2
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZH3|1|S2|A|760
8ZH3|1|S2|G|761
8ZH3|1|S2|A|762
8ZH3|1|S2|G|763
*
8ZH3|1|S2|C|773
8ZH3|1|S2|A|774
8ZH3|1|S2|G|775
*
8ZH3|1|S2|U|785
8ZH3|1|S2|C|786
8ZH3|1|S2|G|787
8ZH3|1|S2|A|788
8ZH3|1|S2|A|789
8ZH3|1|S2|U|790
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sd
- Small ribosomal subunit protein eS24A
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