J3_8ZHB_008

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UC*GAGGACUGCG*CAAGGA

Length

18 nucleotides

Bulged bases

8ZHB|1|LA|A|591, 8ZHB|1|LA|C|592, 8ZHB|1|LA|U|593, 8ZHB|1|LA|A|606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHB_008 not in the Motif Atlas

Homologous match to J3_8P9A_048

Geometric discrepancy: 0.2877

The information below is about J3_8P9A_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86133.1

Basepair signature

cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZHB|1|LA|U|501
8ZHB|1|LA|C|502
*
8ZHB|1|LA|G|587
8ZHB|1|LA|A|588
8ZHB|1|LA|G|589
8ZHB|1|LA|G|590
8ZHB|1|LA|A|591
8ZHB|1|LA|C|592
8ZHB|1|LA|U|593
8ZHB|1|LA|G|594
8ZHB|1|LA|C|595
8ZHB|1|LA|G|596
*
8ZHB|1|LA|C|605
8ZHB|1|LA|A|606
8ZHB|1|LA|A|607
8ZHB|1|LA|G|608
8ZHB|1|LA|G|609
8ZHB|1|LA|A|610

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LH

Large ribosomal subunit protein eL6B

Chain LI

Large ribosomal subunit protein uL30A

Chain Lg

Large ribosomal subunit protein eL32