J3_8ZHB_010
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 8ZHB|1|LA|A|895
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHB_010 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.0974
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8ZHB|1|LA|A|827
8ZHB|1|LA|U|828
8ZHB|1|LA|A|829
8ZHB|1|LA|G|830
*
8ZHB|1|LA|C|862
8ZHB|1|LA|G|863
8ZHB|1|LA|U|864
8ZHB|1|LA|A|865
8ZHB|1|LA|G|866
*
8ZHB|1|LA|U|891
8ZHB|1|LA|C|892
8ZHB|1|LA|G|893
8ZHB|1|LA|A|894
8ZHB|1|LA|A|895
8ZHB|1|LA|U|896
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain Li
- Large ribosomal subunit protein eL34A
- Chain Lr
- Large ribosomal subunit protein eL43A
Coloring options: