J3_8ZHB_025

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHB_025 not in the Motif Atlas

Homologous match to J3_8P9A_065

Geometric discrepancy: 0.1498

The information below is about J3_8P9A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_81015.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8ZHB|1|LA|C|3297
8ZHB|1|LA|A|3298
8ZHB|1|LA|U|3299
*
8ZHB|1|LA|A|3313
8ZHB|1|LA|G|3314
8ZHB|1|LA|A|3315
8ZHB|1|LA|U|3316
8ZHB|1|LA|G|3317
*
8ZHB|1|LA|C|3387
8ZHB|1|LA|U|3388
8ZHB|1|LA|G|3389

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein uL22A

Chain Lf

Large ribosomal subunit protein eL31A