J3_8ZHB_029
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8ZHB|1|S2|A|46, 8ZHB|1|S2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHB_029 not in the Motif Atlas
- Geometric match to J3_8P9A_069
- Geometric discrepancy: 0.123
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZHB|1|S2|A|41
8ZHB|1|S2|G|42
8ZHB|1|S2|A|43
8ZHB|1|S2|U|44
8ZHB|1|S2|U|45
8ZHB|1|S2|A|46
8ZHB|1|S2|A|47
8ZHB|1|S2|G|48
*
8ZHB|1|S2|C|431
8ZHB|1|S2|G|432
8ZHB|1|S2|C|433
8ZHB|1|S2|G|434
8ZHB|1|S2|C|435
8ZHB|1|S2|A|436
8ZHB|1|S2|A|437
8ZHB|1|S2|A|438
8ZHB|1|S2|U|439
*
8ZHB|1|S2|A|464
8ZHB|1|S2|G|465
8ZHB|1|S2|U|466
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sc
- Small ribosomal subunit protein uS12A
Coloring options: