J3_8ZHB_031
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 8ZHB|1|S2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHB_031 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.1281
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8ZHB|1|S2|U|633
8ZHB|1|S2|G|634
8ZHB|1|S2|A|635
*
8ZHB|1|S2|U|861
8ZHB|1|S2|A|862
8ZHB|1|S2|A|863
8ZHB|1|S2|U|864
8ZHB|1|S2|A|865
*
8ZHB|1|S2|U|965
8ZHB|1|S2|A|966
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SU
- Small ribosomal subunit protein eS7A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sf
- Small ribosomal subunit protein eS27A
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