J3_8ZHB_036

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

8ZHB|1|S2|C|1162, 8ZHB|1|S2|A|1583, 8ZHB|1|S2|U|1612, 8ZHB|1|S2|U|1613, 8ZHB|1|S2|C|1615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHB|1|S2|C|1161
8ZHB|1|S2|C|1162
8ZHB|1|S2|A|1163
8ZHB|1|S2|G|1164
*
8ZHB|1|S2|C|1581
8ZHB|1|S2|U|1582
8ZHB|1|S2|A|1583
8ZHB|1|S2|G|1584
8ZHB|1|S2|U|1585
8ZHB|1|S2|A|1586
8ZHB|1|S2|A|1587
*
8ZHB|1|S2|U|1609
8ZHB|1|S2|G|1610
8ZHB|1|S2|A|1611
8ZHB|1|S2|U|1612
8ZHB|1|S2|U|1613
8ZHB|1|S2|A|1614
8ZHB|1|S2|C|1615
8ZHB|1|S2|G|1616

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SL

Small ribosomal subunit protein eS28A