J3_8ZHB_038
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8ZHB|1|S2|G|1199, 8ZHB|1|S2|G|1201, 8ZHB|1|S2|A|1202, 8ZHB|1|S2|A|1203, 8ZHB|1|S2|C|1456, 8ZHB|1|S2|C|1457
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHB|1|S2|C|1180
8ZHB|1|S2|U|1181
8ZHB|1|S2|U|1182
8ZHB|1|S2|A|1183
8ZHB|1|S2|A|1184
8ZHB|1|S2|U|1185
8ZHB|1|S2|U|1186
8ZHB|1|S2|U|1187
*
8ZHB|1|S2|G|1198
8ZHB|1|S2|G|1199
8ZHB|1|S2|G|1200
8ZHB|1|S2|G|1201
8ZHB|1|S2|A|1202
8ZHB|1|S2|A|1203
8ZHB|1|S2|A|1204
8ZHB|1|S2|C|1205
8ZHB|1|S2|U|1206
8ZHB|1|S2|C|1207
8ZHB|1|S2|A|1208
8ZHB|1|S2|C|1209
*
8ZHB|1|S2|G|1454
8ZHB|1|S2|G|1455
8ZHB|1|S2|C|1456
8ZHB|1|S2|C|1457
8ZHB|1|S2|G|1458
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SE
- Small ribosomal subunit protein uS19
- Chain SH
- Small ribosomal subunit protein uS13A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SN
- Small ribosomal subunit protein eS31
- Chain Ta
- Transfer RNA; tRNA
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