J3_8ZHC_006

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

8ZHC|1|LA|A|398, 8ZHC|1|LA|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHC_006 not in the Motif Atlas

Homologous match to J3_8CRE_006

Geometric discrepancy: 0.0998

The information below is about J3_8CRE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8ZHC|1|LA|A|369
8ZHC|1|LA|U|370
8ZHC|1|LA|G|371
8ZHC|1|LA|A|372
8ZHC|1|LA|A|373
8ZHC|1|LA|A|374
8ZHC|1|LA|A|375
8ZHC|1|LA|G|376
8ZHC|1|LA|A|377
8ZHC|1|LA|A|378
8ZHC|1|LA|C|379
*
8ZHC|1|LA|G|390
8ZHC|1|LA|A|391
8ZHC|1|LA|G|392
8ZHC|1|LA|U|393
8ZHC|1|LA|G|394
8ZHC|1|LA|A|395
8ZHC|1|LA|A|396
8ZHC|1|LA|A|397
8ZHC|1|LA|A|398
8ZHC|1|LA|A|399
8ZHC|1|LA|G|400
8ZHC|1|LA|U|401
8ZHC|1|LA|A|402
8ZHC|1|LA|C|403
8ZHC|1|LA|G|404
*
8ZHC|1|LC|C|19
8ZHC|1|LC|U|20

Current chains

Chain LA

25S rRNA (3393-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LR

Large ribosomal subunit protein uL22A

Chain La

Large ribosomal subunit protein uL24A

Chain Ln

Large ribosomal subunit protein eL39

Chain pp

Peptide 2k