J3_8ZHC_008
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|816, 8ZHC|1|LA|G|923, 8ZHC|1|LA|A|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHC_008 not in the Motif Atlas
- Homologous match to J3_8CRE_009
- Geometric discrepancy: 0.0524
- The information below is about J3_8CRE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZHC|1|LA|U|813
8ZHC|1|LA|G|814
8ZHC|1|LA|A|815
8ZHC|1|LA|A|816
8ZHC|1|LA|C|817
8ZHC|1|LA|U|818
8ZHC|1|LA|A|819
*
8ZHC|1|LA|U|904
8ZHC|1|LA|A|905
8ZHC|1|LA|G|906
*
8ZHC|1|LA|C|922
8ZHC|1|LA|G|923
8ZHC|1|LA|A|924
8ZHC|1|LA|A|925
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain Ln
- Large ribosomal subunit protein eL39
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