J3_8ZHC_011

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAC*GCUAAGGAGUG*CUCACC

Length

21 nucleotides

Bulged bases

8ZHC|1|LA|A|1258, 8ZHC|1|LA|A|1262, 8ZHC|1|LA|U|1264, 8ZHC|1|LA|U|1275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|G|1228
8ZHC|1|LA|G|1229
8ZHC|1|LA|A|1230
8ZHC|1|LA|C|1231
*
8ZHC|1|LA|G|1255
8ZHC|1|LA|C|1256
8ZHC|1|LA|U|1257
8ZHC|1|LA|A|1258
8ZHC|1|LA|A|1259
8ZHC|1|LA|G|1260
8ZHC|1|LA|G|1261
8ZHC|1|LA|A|1262
8ZHC|1|LA|G|1263
8ZHC|1|LA|U|1264
8ZHC|1|LA|G|1265
*
8ZHC|1|LA|C|1274
8ZHC|1|LA|U|1275
8ZHC|1|LA|C|1276
8ZHC|1|LA|A|1277
8ZHC|1|LA|C|1278
8ZHC|1|LA|C|1279

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains