J3_8ZHC_026

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AAC*GAUACGU*AAUCUU

Length

16 nucleotides

Bulged bases

8ZHC|1|LC|U|60, 8ZHC|1|LC|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LC|A|43
8ZHC|1|LC|A|44
8ZHC|1|LC|C|45
*
8ZHC|1|LC|G|58
8ZHC|1|LC|A|59
8ZHC|1|LC|U|60
8ZHC|1|LC|A|61
8ZHC|1|LC|C|62
8ZHC|1|LC|G|63
8ZHC|1|LC|U|64
*
8ZHC|1|LC|A|96
8ZHC|1|LC|A|97
8ZHC|1|LC|U|98
8ZHC|1|LC|C|99
8ZHC|1|LC|U|100
8ZHC|1|LC|U|101

Current chains

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LZ

Large ribosomal subunit protein uL23

Chain Lj

Large ribosomal subunit protein uL29A

Chain Ll

Large ribosomal subunit protein eL37A

Chain Ln

Large ribosomal subunit protein eL39