J3_8ZHC_029
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 8ZHC|1|S2|A|225, 8ZHC|1|S2|A|226, 8ZHC|1|S2|U|227, 8ZHC|1|S2|U|238, 8ZHC|1|S2|C|239, 8ZHC|1|S2|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|S2|A|213
8ZHC|1|S2|G|214
8ZHC|1|S2|A|215
8ZHC|1|S2|U|216
8ZHC|1|S2|A|217
8ZHC|1|S2|A|218
8ZHC|1|S2|A|219
8ZHC|1|S2|A|220
8ZHC|1|S2|A|221
8ZHC|1|S2|A|222
8ZHC|1|S2|U|223
8ZHC|1|S2|C|224
8ZHC|1|S2|A|225
8ZHC|1|S2|A|226
8ZHC|1|S2|U|227
8ZHC|1|S2|G|228
*
8ZHC|1|S2|C|237
8ZHC|1|S2|U|238
8ZHC|1|S2|C|239
8ZHC|1|S2|U|240
8ZHC|1|S2|U|241
8ZHC|1|S2|U|242
8ZHC|1|S2|G|243
*
8ZHC|1|S2|C|250
8ZHC|1|S2|A|251
8ZHC|1|S2|U|252
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
Coloring options: