J3_8ZHC_031
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8ZHC|1|S2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHC_031 not in the Motif Atlas
- Geometric match to J3_8P9A_072
- Geometric discrepancy: 0.0935
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8ZHC|1|S2|U|633
8ZHC|1|S2|G|634
8ZHC|1|S2|A|635
*
8ZHC|1|S2|U|861
8ZHC|1|S2|A|862
8ZHC|1|S2|A|863
8ZHC|1|S2|U|864
8ZHC|1|S2|A|865
8ZHC|1|S2|G|866
*
8ZHC|1|S2|C|962
8ZHC|1|S2|A|963
8ZHC|1|S2|U|964
8ZHC|1|S2|U|965
8ZHC|1|S2|A|966
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SU
- Small ribosomal subunit protein eS7A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sf
- Small ribosomal subunit protein eS27A
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