J3_8ZHC_038
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGUCCAGACA*UGGGUGG*CCUUAGACGUUC
- Length
- 29 nucleotides
- Bulged bases
- 8ZHC|1|S2|G|1213, 8ZHC|1|S2|U|1214, 8ZHC|1|S2|C|1215, 8ZHC|1|S2|C|1216, 8ZHC|1|S2|A|1217, 8ZHC|1|S2|G|1218, 8ZHC|1|S2|C|1220, 8ZHC|1|S2|G|1263, 8ZHC|1|S2|G|1264, 8ZHC|1|S2|U|1266, 8ZHC|1|S2|C|1441, 8ZHC|1|S2|A|1444, 8ZHC|1|S2|G|1445, 8ZHC|1|S2|A|1446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|S2|G|1212
8ZHC|1|S2|G|1213
8ZHC|1|S2|U|1214
8ZHC|1|S2|C|1215
8ZHC|1|S2|C|1216
8ZHC|1|S2|A|1217
8ZHC|1|S2|G|1218
8ZHC|1|S2|A|1219
8ZHC|1|S2|C|1220
8ZHC|1|S2|A|1221
*
8ZHC|1|S2|U|1262
8ZHC|1|S2|G|1263
8ZHC|1|S2|G|1264
8ZHC|1|S2|G|1265
8ZHC|1|S2|U|1266
8ZHC|1|S2|G|1267
8ZHC|1|S2|G|1268
*
8ZHC|1|S2|C|1440
8ZHC|1|S2|C|1441
8ZHC|1|S2|U|1442
8ZHC|1|S2|U|1443
8ZHC|1|S2|A|1444
8ZHC|1|S2|G|1445
8ZHC|1|S2|A|1446
8ZHC|1|S2|C|1447
8ZHC|1|S2|G|1448
8ZHC|1|S2|U|1449
8ZHC|1|S2|U|1450
8ZHC|1|S2|C|1451
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SC
- Small ribosomal subunit protein eS10A
- Chain SD
- Small ribosomal subunit protein eS12
- Chain SE
- Small ribosomal subunit protein uS19
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SN
- Small ribosomal subunit protein eS31
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
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