J3_8ZHC_041
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUAACCUACUAAAUAGUG*CACUUCUUAGAGGGAC*GUUUGA
- Length
- 40 nucleotides
- Bulged bases
- 8ZHC|1|S2|A|1341, 8ZHC|1|S2|C|1342, 8ZHC|1|S2|A|1346, 8ZHC|1|S2|G|1349, 8ZHC|1|S2|A|1375, 8ZHC|1|S2|U|1413, 8ZHC|1|S2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|S2|U|1334
8ZHC|1|S2|U|1335
8ZHC|1|S2|A|1336
8ZHC|1|S2|A|1337
8ZHC|1|S2|C|1338
8ZHC|1|S2|C|1339
8ZHC|1|S2|U|1340
8ZHC|1|S2|A|1341
8ZHC|1|S2|C|1342
8ZHC|1|S2|U|1343
8ZHC|1|S2|A|1344
8ZHC|1|S2|A|1345
8ZHC|1|S2|A|1346
8ZHC|1|S2|U|1347
8ZHC|1|S2|A|1348
8ZHC|1|S2|G|1349
8ZHC|1|S2|U|1350
8ZHC|1|S2|G|1351
*
8ZHC|1|S2|C|1374
8ZHC|1|S2|A|1375
8ZHC|1|S2|C|1376
8ZHC|1|S2|U|1377
8ZHC|1|S2|U|1378
8ZHC|1|S2|C|1379
8ZHC|1|S2|U|1380
8ZHC|1|S2|U|1381
8ZHC|1|S2|A|1382
8ZHC|1|S2|G|1383
8ZHC|1|S2|A|1384
8ZHC|1|S2|G|1385
8ZHC|1|S2|G|1386
8ZHC|1|S2|G|1387
8ZHC|1|S2|A|1388
8ZHC|1|S2|C|1389
*
8ZHC|1|S2|G|1412
8ZHC|1|S2|U|1413
8ZHC|1|S2|U|1414
8ZHC|1|S2|U|1415
8ZHC|1|S2|G|1416
8ZHC|1|S2|A|1417
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SO
- Small ribosomal subunit protein RACK1
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