J3_8ZTU_018

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZTU_018 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0762

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8ZTU|1|a|G|30
8ZTU|1|a|C|31
*
8ZTU|1|a|G|474
8ZTU|1|a|C|475
8ZTU|1|a|G|476
8ZTU|1|a|A|477
8ZTU|1|a|A|478
8ZTU|1|a|A|479
8ZTU|1|a|A|480
8ZTU|1|a|G|481
*
8ZTU|1|a|C|509
8ZTU|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24