3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
9AX7|1|A|U|1240, 9AX7|1|A|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9AX7_017 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1347
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

9AX7|1|A|C|1237
9AX7|1|A|A|1238
9AX7|1|A|A|1239
9AX7|1|A|U|1240
9AX7|1|A|G|1241
*
9AX7|1|A|C|1296
9AX7|1|A|G|1297
9AX7|1|A|U|1298
9AX7|1|A|A|1299
9AX7|1|A|G|1300
9AX7|1|A|U|1301
9AX7|1|A|C|1302
9AX7|1|A|C|1303
*
9AX7|1|A|G|1334
9AX7|1|A|U|1335
9AX7|1|A|C|1336
9AX7|1|A|G|1337

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13

Coloring options:


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