J3_9AX8_013

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9AX8|1|A|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AX8_013 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0605

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9AX8|1|A|C|2091
9AX8|1|A|U|2092
9AX8|1|A|G|2093
*
9AX8|1|A|C|2196
9AX8|1|A|U|2197
9AX8|1|A|A|2198
9AX8|1|A|A|2199
9AX8|1|A|C|2200
*
9AX8|1|A|G|2223
9AX8|1|A|G|2224
9AX8|1|A|A|2225
9AX8|1|A|C|2226
9AX8|1|A|A|2227
9AX8|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain 9

50S ribosomal protein L2