J3_9AX8_020
3D structure
- PDB id
- 9AX8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9AX8_020 not in the Motif Atlas
- Geometric match to J3_8C3A_082
- Geometric discrepancy: 0.1779
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9AX8|1|a|G|46
9AX8|1|a|C|47
*
9AX8|1|a|G|361
9AX8|1|a|G|362
9AX8|1|a|A|363
9AX8|1|a|A|364
9AX8|1|a|U|365
9AX8|1|a|A|366
9AX8|1|a|U|367
*
9AX8|1|a|A|393
9AX8|1|a|G|394
9AX8|1|a|C|395
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
- Chain z
- Translation initiation factor IF2
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